Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7419

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15786 and 15787 are separated by 942 nucleotides15787 and 15788 are separated by 291 nucleotides15788 and 15789 are separated by 384 nucleotides mRNA_7418: 15786 - Hypothetical Protein, at 234,371 to 235,150 15786 mRNA_7419: 15787 - Hypothetical Protein, at 236,093 to 236,724 15787 mRNA_7420: 15788 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 237,016 to 237,326 15788 mRNA_7421: 15789 - Hypothetical Protein, at 237,711 to 239,043 15789

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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235,109 - +0.6
235,115 - +0.7
235,121 + +0.2
235,271 - +0.0
235,280 + -0.1
235,545 - +0.6
235,701 + +1.3
235,824 - +0.2
235,989 + -0.2
236,240 - 15787 mRNA_7419 0.23 +0.8
236,762 - -0.3
237,026 - +1.1
237,446 - +0.3

Or see this region's nucleotide sequence