Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7433

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15800 and 15801 are separated by 412 nucleotides15801 and 15802 are separated by 381 nucleotides mRNA_7432: 15800 - KOG4197 FOG PPR repeat, at 263,025 to 264,767 15800 mRNA_7433: 15801 - K10356 MYO1 myosin I, at 265,180 to 270,208 15801 mRNA_7434: 15802 - HMMPfam-Outer membrane protein TOM13-PF08219, at 270,590 to 273,357 15802

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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264,837 + +0.6
264,862 - +0.4
264,975 + +0.4
265,003 - +0.1
265,134 - +0.7
265,155 + +1.0
269,406 - 15801 mRNA_7433 0.84 +0.7
269,654 + 15801 mRNA_7433 0.89 +1.2
270,258 - +1.6
270,288 - +0.3
270,333 - +0.9
270,446 - +0.9
270,449 - +1.0
270,454 - +1.1
270,555 + -0.2
270,602 + -1.0
270,746 + -0.1

Or see this region's nucleotide sequence