Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7438

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15805 and 15806 are separated by 253 nucleotides15806 and 15807 are separated by 926 nucleotides mRNA_7437: 15805 - K01756 purB, ADSL adenylosuccinate lyase, at 276,524 to 278,511 15805 mRNA_7438: 15806 - K01455 E3.5.1.49 formamidase, at 278,765 to 280,421 15806 mRNA_7439: 15807 - K20989 DUR3 urea-proton symporter, at 281,348 to 284,451 15807

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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278,555 + -0.2
278,559 + +1.5
278,560 - -0.7
278,566 + +0.1
278,570 + +1.1
278,582 + -0.4
278,583 - +0.1
278,583 - +1.5
278,584 + +0.2
278,588 + +0.2
278,595 - +1.9
278,723 - -0.8
278,730 - +0.5
278,741 - +0.6
278,748 + +0.4
279,189 + 15806 mRNA_7438 0.26 +0.1
279,767 + 15806 mRNA_7438 0.60 -0.3
279,910 - 15806 mRNA_7438 0.69 +0.3
280,056 - 15806 mRNA_7438 0.78 +0.6
280,344 - +0.4
280,496 + -0.1
280,520 - +0.8
280,526 + -0.1
280,526 + -0.3
280,548 - +1.0
280,548 - +0.1
280,644 - +1.1
280,654 - +0.4
280,655 - +0.3
280,662 + -0.3
280,677 + -0.2
280,798 + +0.8
280,812 + +0.6
280,815 - +1.4
280,824 - +0.8
280,827 - +0.3

Or see this region's nucleotide sequence