Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7458

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15825 and 15826 are separated by 511 nucleotides mRNA_7457: 15825 - Hypothetical Protein, at 317,790 to 319,145 15825 mRNA_7458: 15826 - BLAST proteophosphoglycan protein, putative [Rhizoctonia so..., at 319,657 to 320,898 15826

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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318,891 + 15825 mRNA_7457 0.81 +0.7
318,909 + 15825 mRNA_7457 0.83 -0.6
318,939 + 15825 mRNA_7457 0.85 +1.7
318,959 - 15825 mRNA_7457 0.86 +0.2
319,092 + -0.2
319,244 - +0.2
319,381 - +0.5
319,494 + +1.1
319,524 - +0.4
319,527 - -0.2
319,527 + +0.1
319,689 + -0.3
320,432 + 15826 mRNA_7458 0.62 +0.7
320,736 + 15826 mRNA_7458 0.87 +0.3
320,841 + +1.0
320,851 - -0.3
320,869 + +0.4
320,874 + +0.4
321,035 + +0.5
321,148 + -0.7
321,152 + -0.7
321,162 - -0.1
321,281 - -0.1
321,303 - +2.0
321,325 + -0.9
321,452 + +0.4
321,453 + -0.9
321,463 - +0.8
321,465 + +0.6
321,482 + +0.0
321,602 - +0.2
321,889 - -0.5

Or see this region's nucleotide sequence