Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7466

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15833 and 15834 are separated by 538 nucleotides15834 and 15835 are separated by 147 nucleotides mRNA_7465: 15833 - K08518 STXBP5, SRO7_77 syntaxin-binding protein 5, at 340,933 to 344,642 15833 mRNA_7466: 15834 - K17887 SNX25, MDM1 sorting nexin-25, at 345,181 to 349,645 15834 mRNA_7467: 15835 - Hypothetical Protein, at 349,793 to 351,109 15835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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345,168 + +0.8
345,690 + 15834 mRNA_7466 0.11 -0.1
345,893 + 15834 mRNA_7466 0.16 -0.2
345,955 - 15834 mRNA_7466 0.17 +0.2
345,990 + 15834 mRNA_7466 0.18 +0.6
346,107 + 15834 mRNA_7466 0.21 -0.1
346,122 - 15834 mRNA_7466 0.21 -0.9
346,398 + 15834 mRNA_7466 0.27 -0.5
346,518 - 15834 mRNA_7466 0.30 +0.7
346,969 + 15834 mRNA_7466 0.40 -1.2
347,247 - 15834 mRNA_7466 0.46 +0.5
347,426 + 15834 mRNA_7466 0.50 -1.0
347,474 + 15834 mRNA_7466 0.51 +0.4
347,650 - 15834 mRNA_7466 0.55 +0.2
347,799 - 15834 mRNA_7466 0.59 +2.2
347,874 - 15834 mRNA_7466 0.60 -1.8
348,188 + 15834 mRNA_7466 0.67 -0.5
348,415 + 15834 mRNA_7466 0.72 -0.5
348,587 - 15834 mRNA_7466 0.76 +0.3
348,722 - 15834 mRNA_7466 0.79 -0.0
349,006 + 15834 mRNA_7466 0.86 -1.4
349,279 + +0.1
349,279 + +2.1
349,293 + +0.4
349,391 + +0.5
349,409 + +0.1
349,439 - +0.2
349,449 + +1.6
349,569 - -0.2
349,571 - +1.3
349,579 - +0.2
349,579 - +0.2
349,582 - -1.8
349,725 + +1.0
349,744 + +1.4
349,749 + -0.8
349,904 - -0.5
350,015 - 15835 mRNA_7467 0.17 -0.1
350,022 - 15835 mRNA_7467 0.17 -0.2
350,027 + 15835 mRNA_7467 0.18 +2.1
350,136 + 15835 mRNA_7467 0.26 +0.2
350,315 - 15835 mRNA_7467 0.40 +0.8
350,320 + 15835 mRNA_7467 0.40 +0.8
350,324 - 15835 mRNA_7467 0.40 +0.6
350,337 - 15835 mRNA_7467 0.41 -0.0
350,486 - 15835 mRNA_7467 0.53 +1.9
350,587 - 15835 mRNA_7467 0.60 -0.0
350,617 + 15835 mRNA_7467 0.63 -1.2

Or see this region's nucleotide sequence