Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7467

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15834 and 15835 are separated by 147 nucleotides15835 and 15836 are separated by 350 nucleotides mRNA_7466: 15834 - K17887 SNX25, MDM1 sorting nexin-25, at 345,181 to 349,645 15834 mRNA_7467: 15835 - Hypothetical Protein, at 349,793 to 351,109 15835 mRNA_7468: 15836 - Hypothetical Protein, at 351,460 to 352,308 15836

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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349,006 + 15834 mRNA_7466 0.86 -1.4
349,279 + +0.1
349,279 + +2.1
349,293 + +0.4
349,391 + +0.5
349,409 + +0.1
349,439 - +0.2
349,449 + +1.6
349,569 - -0.2
349,571 - +1.3
349,579 - +0.2
349,579 - +0.2
349,582 - -1.8
349,725 + +1.0
349,744 + +1.4
349,749 + -0.8
349,904 - -0.5
350,015 - 15835 mRNA_7467 0.17 -0.1
350,022 - 15835 mRNA_7467 0.17 -0.2
350,027 + 15835 mRNA_7467 0.18 +2.1
350,136 + 15835 mRNA_7467 0.26 +0.2
350,315 - 15835 mRNA_7467 0.40 +0.8
350,320 + 15835 mRNA_7467 0.40 +0.8
350,324 - 15835 mRNA_7467 0.40 +0.6
350,337 - 15835 mRNA_7467 0.41 -0.0
350,486 - 15835 mRNA_7467 0.53 +1.9
350,587 - 15835 mRNA_7467 0.60 -0.0
350,617 + 15835 mRNA_7467 0.63 -1.2
350,778 - 15835 mRNA_7467 0.75 +0.6
351,054 + +1.3
351,104 + +0.4
351,199 - +1.2
351,211 + -0.3
351,327 - +1.2
351,476 - +0.2
351,488 + +0.3
351,630 - 15836 mRNA_7468 0.20 +0.6
351,736 + 15836 mRNA_7468 0.33 +1.4
351,781 - 15836 mRNA_7468 0.38 -0.2
351,797 - 15836 mRNA_7468 0.40 +0.8
351,913 + 15836 mRNA_7468 0.53 -0.7
352,028 - 15836 mRNA_7468 0.67 +0.9

Or see this region's nucleotide sequence