Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7480

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15847 and 15848 are separated by 123 nucleotides15848 and 15849 are separated by 196 nucleotides mRNA_7479: 15847 - Hypothetical Protein, at 383,023 to 384,509 15847 mRNA_7480: 15848 - K01868 TARS, thrS threonyl-tRNA synthetase, at 384,633 to 387,547 15848 mRNA_7481: 15849 - HMMPfam-Mitochondrial domain of unknown function (DUF1713)-PF08213, at 387,744 to 389,157 15849

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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383,672 + 15847 mRNA_7479 0.44 +0.1
384,266 + 15847 mRNA_7479 0.84 -0.1
384,277 - 15847 mRNA_7479 0.84 +1.1
384,277 - 15847 mRNA_7479 0.84 +0.5
384,325 - 15847 mRNA_7479 0.88 +0.3
384,394 - -0.2
384,429 + +0.2
384,529 + -0.8
385,423 + 15848 mRNA_7480 0.27 +1.6
387,652 - +0.1

Or see this region's nucleotide sequence