Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7491

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15858 and 15859 are separated by 86 nucleotides mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409,726 to 411,732 15858 mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411,819 to 412,834 15859

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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410,858 + 15858 mRNA_7490 0.56 -1.2
411,007 - 15858 mRNA_7490 0.64 +0.7
411,143 + 15858 mRNA_7490 0.71 -0.4
411,566 - +0.8
411,739 + -0.4
411,748 - +0.6
411,765 - -0.6
411,871 - -1.1
411,895 + +0.8
412,000 - 15859 mRNA_7491 0.18 -0.5
412,034 + 15859 mRNA_7491 0.21 +0.0
412,036 - 15859 mRNA_7491 0.21 +1.1
412,037 + 15859 mRNA_7491 0.21 +0.6
412,195 + 15859 mRNA_7491 0.37 -0.1
412,195 + 15859 mRNA_7491 0.37 +0.5
412,195 + 15859 mRNA_7491 0.37 -0.3
412,200 - 15859 mRNA_7491 0.38 -0.2
412,461 + 15859 mRNA_7491 0.63 +0.3
412,481 - 15859 mRNA_7491 0.65 -0.6
412,763 - +1.4
412,766 - -0.2
412,789 + -0.1
412,867 - +1.4
412,916 - +0.1
412,937 + +0.1
413,041 - +0.5
413,207 + +0.0
413,319 - -0.1
413,353 - +1.3
413,370 + +0.2
413,651 - +1.6
413,785 - +0.1

Or see this region's nucleotide sequence