Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7492

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15860 and 15861 are separated by 271 nucleotides mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413,900 to 421,307 15860 mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421,579 to 423,387 15861

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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412,916 - +0.1
412,937 + +0.1
413,041 - +0.5
413,207 + +0.0
413,319 - -0.1
413,353 - +1.3
413,370 + +0.2
413,651 - +1.6
413,785 - +0.1
413,901 + +0.9
413,909 + +1.7
413,978 + -0.4
414,526 + +0.7
414,813 - 15860 mRNA_7492 0.12 +1.5
415,379 - 15860 mRNA_7492 0.20 -0.3
415,389 - 15860 mRNA_7492 0.20 +0.2
415,726 + 15860 mRNA_7492 0.25 +0.1
416,125 + 15860 mRNA_7492 0.30 -0.0
416,394 - 15860 mRNA_7492 0.34 +0.3
416,687 + 15860 mRNA_7492 0.38 +0.3
416,868 + 15860 mRNA_7492 0.40 +0.2
416,887 - 15860 mRNA_7492 0.40 +0.5
417,729 - 15860 mRNA_7492 0.52 +0.1
417,873 - 15860 mRNA_7492 0.54 +0.1
418,404 + 15860 mRNA_7492 0.61 +1.2
419,005 + 15860 mRNA_7492 0.69 +0.5
419,186 + 15860 mRNA_7492 0.71 -0.2
419,457 + 15860 mRNA_7492 0.75 +0.4
419,469 + 15860 mRNA_7492 0.75 +0.4
419,484 + 15860 mRNA_7492 0.75 -0.1
419,958 - 15860 mRNA_7492 0.82 +0.5
420,014 - 15860 mRNA_7492 0.83 +0.6
420,053 - 15860 mRNA_7492 0.83 +0.2
420,093 - 15860 mRNA_7492 0.84 -0.6
420,648 - +1.1
420,869 + +1.1
420,939 - +0.9
420,957 - -0.8
421,093 - +2.6
421,120 - -0.3
421,253 + +0.1
421,408 - +0.1
421,665 - -0.2
421,666 - -0.8
421,677 - -0.1
421,678 - +0.8
421,681 - +0.9
421,689 - +0.8
421,690 + -0.0
421,692 - +0.3
421,694 + +0.6
421,697 + -0.1
421,842 + 15861 mRNA_7493 0.15 +0.2
421,969 - 15861 mRNA_7493 0.22 +0.4
421,970 - 15861 mRNA_7493 0.22 +0.1
421,976 + 15861 mRNA_7493 0.22 -1.4
421,988 - 15861 mRNA_7493 0.23 -0.5
422,126 + 15861 mRNA_7493 0.30 +0.3
422,272 + 15861 mRNA_7493 0.38 +1.1
422,307 + 15861 mRNA_7493 0.40 +0.1

Or see this region's nucleotide sequence