Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7500

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15867 and 15868 are separated by 232 nucleotides mRNA_7499: 15867 - Hypothetical Protein, at 434,357 to 437,673 15867 mRNA_7500: 15868 - KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1, at 437,906 to 438,768 15868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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437,368 - +0.2
437,798 + +0.0
438,129 - 15868 mRNA_7500 0.26 +1.1
438,129 + 15868 mRNA_7500 0.26 +0.3
438,137 + 15868 mRNA_7500 0.27 -1.8
439,289 - +0.3
439,407 - +0.7
439,576 - -0.1
439,749 - +1.9
439,755 + +0.4

Or see this region's nucleotide sequence