Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7580

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15947 and 15948 are separated by 332 nucleotides15948 and 15949 are separated by 410 nucleotides mRNA_7579: 15947 - K03952 NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8, at 608,317 to 609,498 15947 mRNA_7580: 15948 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 609,831 to 611,279 15948 mRNA_7581: 15949 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 611,690 to 614,027 15949

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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609,443 + +0.9
609,607 + -1.9
609,714 + +0.8
611,323 - +0.9
611,326 + +0.3
611,338 + -0.9
611,344 - +0.4
611,346 - -0.3
611,347 + -0.2
611,355 - +0.7
611,355 + +0.5
611,355 + -0.1
611,357 - +1.0
611,363 + -0.0
611,363 + -0.3
611,364 + -0.1
611,498 - +0.0
611,660 + +0.6
611,928 + 15949 mRNA_7581 0.10 -0.1
611,955 + 15949 mRNA_7581 0.11 -0.4

Or see this region's nucleotide sequence