Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7613

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15980 and 15981 are separated by 255 nucleotides15981 and 15982 are separated by 478 nucleotides mRNA_7612: 15980 - Hypothetical Protein, at 672,701 to 674,569 15980 mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674,825 to 677,007 15981 mRNA_7614: 15982 - K14156 CHK choline/ethanolamine kinase, at 677,486 to 680,218 15982

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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674,664 - +0.1
674,973 - +0.5
675,008 + +0.2
675,131 - 15981 mRNA_7613 0.14 +0.2
675,166 + 15981 mRNA_7613 0.16 +0.7
675,182 - 15981 mRNA_7613 0.16 +0.1
675,571 + 15981 mRNA_7613 0.34 -0.6
675,644 + 15981 mRNA_7613 0.38 +0.3
675,646 - 15981 mRNA_7613 0.38 +0.4
675,913 + 15981 mRNA_7613 0.50 +1.3
676,106 + 15981 mRNA_7613 0.59 -0.2
676,678 - 15981 mRNA_7613 0.85 +0.2
676,693 + 15981 mRNA_7613 0.86 +0.1
676,843 + +0.1
677,142 + -1.1
677,155 - +0.2
677,170 - -1.0
677,409 - +0.3
677,410 - +0.1
677,431 + -0.3
677,545 - -0.1
677,563 + -0.1
677,568 - -0.3
677,570 + -0.7
677,573 + +0.8
677,608 - +0.6
677,708 - +0.2
677,750 + +0.4
677,834 + 15982 mRNA_7614 0.13 +0.2
677,861 + 15982 mRNA_7614 0.14 -0.1
677,870 - 15982 mRNA_7614 0.14 -0.2
677,960 + 15982 mRNA_7614 0.17 +2.4

Or see this region's nucleotide sequence