Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7623

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15991 and 15992 are separated by 626 nucleotides mRNA_7623: 15991 - K19564 CTR, HNM1 choline transport protein, at 704,159 to 706,103 15991 mRNA_7624: 15992 - KOG1535 Predicted fumarylacetoacetate hydralase, at 706,730 to 707,973 15992

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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703,178 - -0.5
703,385 - +0.3
703,397 + -0.2
703,668 - +0.1
703,689 + +0.5
703,969 + +0.5
703,991 + +0.1
703,994 + -0.2
703,996 + -0.2
704,126 - +0.4
704,135 + -0.6
704,154 + +1.8
704,442 + 15991 mRNA_7623 0.15 -0.1
704,618 + 15991 mRNA_7623 0.24 -0.8
704,861 - 15991 mRNA_7623 0.36 -0.9
705,005 + 15991 mRNA_7623 0.43 +0.3
705,259 - 15991 mRNA_7623 0.57 +0.7
705,440 + 15991 mRNA_7623 0.66 +0.6
705,452 - 15991 mRNA_7623 0.66 +0.1
705,994 - +0.6
706,018 - -0.4
706,023 + -0.0
706,024 - +0.7
706,308 - -0.2
706,311 - +0.8
706,332 - +0.3
706,456 - +1.0
706,470 + +0.6
706,476 + +0.9
706,479 - +1.3
706,481 - +0.6
706,617 - +0.2
706,631 - +0.7
706,789 + -0.6
706,813 - +0.9
706,966 + 15992 mRNA_7624 0.19 +0.1

Or see this region's nucleotide sequence