Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7632

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15999 and 16000 are separated by 801 nucleotides16000 and 16001 are separated by 171 nucleotides mRNA_7631: 15999 - KOG0226 RNA-binding proteins, at 721,192 to 722,141 15999 mRNA_7632: 16000 - KOG0383 Predicted helicase, at 722,943 to 730,457 16000 mRNA_7633: 16001 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 730,629 to 733,694 16001

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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722,113 + +1.6
722,151 + +0.3
722,160 + -0.3
722,301 + +1.1
722,410 - +1.4
722,575 - +1.0
722,704 - +0.5
722,773 - +0.6
722,828 - -0.3
722,866 + +0.1
723,164 + +0.7
723,187 - +0.4
723,474 + -0.5
723,594 + +0.5
725,353 + 16000 mRNA_7632 0.32 -0.1
725,520 - 16000 mRNA_7632 0.34 +1.4
725,724 + 16000 mRNA_7632 0.37 -0.6
726,468 + 16000 mRNA_7632 0.47 +0.5
727,097 + 16000 mRNA_7632 0.55 +1.0
727,522 - 16000 mRNA_7632 0.61 +0.8
727,788 - 16000 mRNA_7632 0.64 +0.8
727,822 - 16000 mRNA_7632 0.65 +0.2
727,951 + 16000 mRNA_7632 0.67 +0.3
727,999 - 16000 mRNA_7632 0.67 +0.6
728,126 - 16000 mRNA_7632 0.69 +0.1
728,280 - 16000 mRNA_7632 0.71 -1.0
728,345 - 16000 mRNA_7632 0.72 +0.3
728,647 + 16000 mRNA_7632 0.76 +0.8
729,014 + 16000 mRNA_7632 0.81 -1.7
729,090 + 16000 mRNA_7632 0.82 +0.6
729,376 - 16000 mRNA_7632 0.86 +0.2
729,893 + +1.0
730,271 - +0.4
730,580 + +0.6
730,649 + +0.6
730,663 - -0.8
730,675 - +0.2
730,949 + 16001 mRNA_7633 0.10 -0.2
731,011 + 16001 mRNA_7633 0.12 +0.3
731,035 + 16001 mRNA_7633 0.13 +0.8
731,132 - 16001 mRNA_7633 0.16 +0.1

Or see this region's nucleotide sequence