Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7648

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16015 and 16016 are separated by 647 nucleotides16016 and 16017 are separated by 412 nucleotides mRNA_7647: 16015 - KOG2741 Dimeric dihydrodiol dehydrogenase, at 759,091 to 760,573 16015 mRNA_7648: 16016 - K01705 LYS4 homoaconitate hydratase, at 761,221 to 763,593 16016 mRNA_7649: 16017 - K13346 PEX10 peroxin-10, at 764,006 to 765,401 16017

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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760,731 - -0.0
760,743 + +0.3
760,765 + +0.2
760,769 - -1.2
761,026 - +0.2
761,039 + -1.2
761,055 + +0.2
761,188 - +1.3
761,188 - +0.1
761,480 - 16016 mRNA_7648 0.11 -0.6
761,489 + 16016 mRNA_7648 0.11 +3.0
761,757 - 16016 mRNA_7648 0.23 +0.7
761,806 - 16016 mRNA_7648 0.25 -0.9
762,324 - 16016 mRNA_7648 0.46 +1.5
763,468 - -0.2
763,597 - +0.3
763,603 - +0.9
763,613 - +0.8
763,616 + -1.0
763,619 - +0.4
763,724 - +0.3
763,741 - +0.5
763,741 - +0.1
764,064 - -0.3

Or see this region's nucleotide sequence