Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7741

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16108 and 16109 are separated by 312 nucleotides16109 and 16110 are separated by 239 nucleotides mRNA_7740: 16108 - HMMPfam-Kinetochore complex Sim4 subunit Fta1-PF13092, at 966,858 to 968,054 16108 mRNA_7741: 16109 - Hypothetical Protein, at 968,367 to 969,216 16109 mRNA_7742: 16110 - KOG3630 Nuclear pore complex, Nup214/CAN component, at 969,456 to 971,369 16110

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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967,639 - 16108 mRNA_7740 0.65 +0.2
967,850 + 16108 mRNA_7740 0.83 -0.2
967,850 + 16108 mRNA_7740 0.83 +0.2
968,111 - -1.5
968,113 - +0.2
968,308 + +0.6
968,312 - +0.2
968,314 - +0.6
968,769 - 16109 mRNA_7741 0.47 -1.8
968,904 + 16109 mRNA_7741 0.63 +0.1
968,923 + 16109 mRNA_7741 0.65 +1.4
969,150 + +0.1
969,167 - +0.9
969,168 + +1.1
969,293 - -2.0
969,335 - +0.2

Or see this region's nucleotide sequence