Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7751

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16118 and 16119 are separated by 670 nucleotides16119 and 16120 are separated by 87 nucleotides mRNA_7750: 16118 - Hypothetical Protein, at 982,217 to 982,643 16118 mRNA_7751: 16119 - Hypothetical Protein, at 983,314 to 984,554 16119 mRNA_7752: 16120 - Hypothetical Protein, at 984,642 to 987,561 16120

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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982,362 - 16118 mRNA_7750 0.34 +1.0
982,392 - 16118 mRNA_7750 0.41 +0.1
982,434 - 16118 mRNA_7750 0.51 +0.0
982,533 + 16118 mRNA_7750 0.74 +0.5
982,668 + +0.5
982,884 - -0.2
983,424 + +0.1
983,802 + 16119 mRNA_7751 0.39 +0.2
983,805 - 16119 mRNA_7751 0.40 +0.0
983,937 + 16119 mRNA_7751 0.50 +0.5
984,009 + 16119 mRNA_7751 0.56 -2.0
984,041 + 16119 mRNA_7751 0.59 -0.2
984,130 + 16119 mRNA_7751 0.66 -0.8
984,237 + 16119 mRNA_7751 0.74 +0.6
984,313 - 16119 mRNA_7751 0.80 -1.0
984,441 + +0.4
984,443 - +0.3
984,449 + -0.5
984,473 + -0.0
984,473 + +0.0
984,486 + -2.0
984,492 + +0.8
984,557 - +0.8
984,562 - -1.1
984,670 - +0.0
984,690 - -0.3
984,792 - -0.2
984,824 - +0.4
984,922 - -0.6
984,926 + +0.4
984,966 - 16120 mRNA_7752 0.11 -0.1
984,970 + 16120 mRNA_7752 0.11 +1.2
985,004 + 16120 mRNA_7752 0.12 +1.7
985,006 + 16120 mRNA_7752 0.12 +0.5

Or see this region's nucleotide sequence