Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7760

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16128 and 16129 are separated by 186 nucleotides mRNA_7760: 16128 - K05607 AUH methylglutaconyl-CoA hydratase, at 1,005,375 to 1,006,761 16128 mRNA_7761: 16129 - KOG1176 Acyl-CoA synthetase, at 1,006,948 to 1,009,515 16129

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
1,005,036 - +0.2
1,005,044 - -1.1
1,005,053 - +0.8
1,005,099 - -0.7
1,005,202 - +0.1
1,005,240 + +0.1
1,005,752 + 16128 mRNA_7760 0.27 -2.2
1,005,753 + 16128 mRNA_7760 0.27 +1.5
1,006,359 - 16128 mRNA_7760 0.71 +0.1
1,006,387 + 16128 mRNA_7760 0.73 +0.1
1,006,509 + 16128 mRNA_7760 0.82 +0.6
1,006,516 - 16128 mRNA_7760 0.82 +0.5
1,006,638 - -0.1
1,006,781 - +0.1
1,006,794 + +0.5
1,006,814 - +0.4
1,006,828 + +0.5
1,006,828 - +1.4
1,006,830 - +1.9
1,006,832 - +1.0
1,006,833 - +0.5
1,006,837 + -0.6
1,006,848 - +0.5
1,006,852 - +0.4
1,006,852 - +0.3
1,006,866 - +0.3
1,006,867 + +1.9
1,006,868 + +0.3
1,006,872 + +0.5
1,006,875 + +0.7
1,006,875 + +1.5
1,006,879 + +0.6
1,006,879 + +1.3
1,006,880 + +2.0
1,006,880 + +2.1
1,006,881 - -1.2
1,006,883 - +0.5
1,006,892 + +0.3
1,006,892 + +0.9
1,006,895 + +0.1
1,006,898 + -0.8
1,006,899 + +0.8
1,006,900 + -0.2
1,006,901 + +0.0
1,006,901 + -0.2
1,006,904 - +0.2
1,006,905 + +0.4
1,006,905 + -0.2
1,006,915 + -1.0
1,007,031 - +0.5
1,007,033 + -0.2
1,007,068 + -0.3
1,007,187 - +0.8
1,007,280 - 16129 mRNA_7761 0.13 +1.5
1,007,585 + 16129 mRNA_7761 0.25 -1.1

Or see this region's nucleotide sequence