Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7767

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16135 and 16136 are separated by 189 nucleotides mRNA_7767: 16135 - ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896, at 1,018,702 to 1,022,173 16135 mRNA_7768: 16136 - SUPERFAMILY--SSF52058, at 1,022,363 to 1,024,489 16136

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,017,740 - -0.4
1,017,771 - +1.2
1,017,917 - +0.4
1,018,056 - -0.3
1,018,068 + +0.1
1,018,074 + -0.0
1,018,221 - +0.9
1,018,233 - +0.6
1,018,234 + -0.1
1,018,278 - +0.4
1,018,385 - +0.5
1,018,386 + -0.4
1,018,405 - +1.9
1,018,412 + +0.3
1,018,427 + -0.1
1,018,578 + +0.5
1,018,579 + +0.7
1,018,585 - -3.1
1,018,728 - +0.3
1,018,732 - +0.5
1,018,831 - +0.4
1,018,881 + +0.1
1,018,884 + +0.4
1,019,013 - +0.6
1,019,573 + 16135 mRNA_7767 0.25 +1.1
1,019,743 - 16135 mRNA_7767 0.30 -0.4
1,019,744 + 16135 mRNA_7767 0.30 -0.2
1,019,845 - 16135 mRNA_7767 0.33 +1.4
1,019,871 - 16135 mRNA_7767 0.34 +0.7
1,019,907 - 16135 mRNA_7767 0.35 +0.1
1,020,146 + 16135 mRNA_7767 0.42 +0.3
1,020,472 + 16135 mRNA_7767 0.51 -0.3
1,020,475 + 16135 mRNA_7767 0.51 +0.4
1,020,478 - 16135 mRNA_7767 0.51 +0.4
1,020,657 + 16135 mRNA_7767 0.56 +0.9
1,021,304 + 16135 mRNA_7767 0.75 +0.1
1,021,372 - 16135 mRNA_7767 0.77 +0.5
1,021,439 - 16135 mRNA_7767 0.79 -0.5
1,021,449 + 16135 mRNA_7767 0.79 +1.3
1,021,668 + 16135 mRNA_7767 0.85 -0.2
1,021,750 - 16135 mRNA_7767 0.88 +0.2
1,021,970 + +0.4
1,022,160 + +0.7
1,022,166 + +0.6
1,022,171 - +1.6
1,022,297 + +1.1
1,022,330 + +1.1
1,022,414 - +0.3
1,022,414 - -0.2
1,022,495 - -0.4
1,022,758 - 16136 mRNA_7768 0.19 +0.6
1,022,812 + 16136 mRNA_7768 0.21 +0.9
1,023,054 - 16136 mRNA_7768 0.32 +0.8

Or see this region's nucleotide sequence