Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7768

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16135 and 16136 are separated by 189 nucleotides16136 and 16137 are separated by 113 nucleotides mRNA_7767: 16135 - ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896, at 1,018,702 to 1,022,173 16135 mRNA_7768: 16136 - SUPERFAMILY--SSF52058, at 1,022,363 to 1,024,489 16136 mRNA_7769: 16137 - KOG2504 Monocarboxylate transporter, at 1,024,603 to 1,026,390 16137

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,021,372 - 16135 mRNA_7767 0.77 +0.5
1,021,439 - 16135 mRNA_7767 0.79 -0.5
1,021,449 + 16135 mRNA_7767 0.79 +1.3
1,021,668 + 16135 mRNA_7767 0.85 -0.2
1,021,750 - 16135 mRNA_7767 0.88 +0.2
1,021,970 + +0.4
1,022,160 + +0.7
1,022,166 + +0.6
1,022,171 - +1.6
1,022,297 + +1.1
1,022,330 + +1.1
1,022,414 - +0.3
1,022,414 - -0.2
1,022,495 - -0.4
1,022,758 - 16136 mRNA_7768 0.19 +0.6
1,022,812 + 16136 mRNA_7768 0.21 +0.9
1,023,054 - 16136 mRNA_7768 0.32 +0.8
1,023,364 - 16136 mRNA_7768 0.47 -0.3
1,023,373 + 16136 mRNA_7768 0.47 -0.9
1,023,383 + 16136 mRNA_7768 0.48 -0.8
1,023,390 - 16136 mRNA_7768 0.48 +0.4
1,023,511 - 16136 mRNA_7768 0.54 -0.2
1,023,767 + 16136 mRNA_7768 0.66 +0.6
1,023,919 - 16136 mRNA_7768 0.73 -0.3
1,023,948 + 16136 mRNA_7768 0.75 +1.3
1,023,961 + 16136 mRNA_7768 0.75 +0.6
1,023,968 + 16136 mRNA_7768 0.75 -0.3
1,023,976 + 16136 mRNA_7768 0.76 -0.5
1,024,077 + 16136 mRNA_7768 0.81 +0.3
1,024,082 - 16136 mRNA_7768 0.81 +0.0
1,024,102 - 16136 mRNA_7768 0.82 +0.0
1,024,219 + 16136 mRNA_7768 0.87 +0.9
1,024,243 + 16136 mRNA_7768 0.88 +0.3
1,024,297 + -0.3
1,024,362 - +1.0
1,024,363 - -0.2
1,024,534 - -0.8
1,024,551 - -1.1
1,024,675 + +0.5
1,024,693 - +0.5
1,024,749 + +0.1
1,024,972 + 16137 mRNA_7769 0.21 -0.0

Or see this region's nucleotide sequence