Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7777

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16144 and 16145 are separated by 392 nucleotides16145 and 16146 are separated by 31 nucleotides mRNA_7776: 16144 - K01899 LSC1 succinyl-CoA synthetase alpha subunit, at 1,037,588 to 1,039,295 16144 mRNA_7777: 16145 - KOG0769 Predicted mitochondrial carrier protein, at 1,039,688 to 1,041,157 16145 mRNA_7778: 16146 - Hypothetical Protein, at 1,041,189 to 1,043,169 16146

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,039,458 - +0.2
1,039,473 + +0.4
1,040,679 - 16145 mRNA_7777 0.67 -0.2
1,041,200 - +1.6
1,041,237 - +1.0
1,041,237 + -0.9
1,041,246 + +1.1
1,041,249 + +1.2
1,041,307 - +0.9
1,041,400 + 16146 mRNA_7778 0.11 +0.3
1,041,402 + 16146 mRNA_7778 0.11 +0.2
1,041,405 + 16146 mRNA_7778 0.11 +0.0
1,041,409 - 16146 mRNA_7778 0.11 +0.5
1,041,412 - 16146 mRNA_7778 0.11 -0.2
1,041,417 + 16146 mRNA_7778 0.12 +1.4
1,041,423 - 16146 mRNA_7778 0.12 +0.3
1,041,426 + 16146 mRNA_7778 0.12 +0.3
1,041,437 + 16146 mRNA_7778 0.13 +0.3
1,041,438 + 16146 mRNA_7778 0.13 -0.1
1,041,459 - 16146 mRNA_7778 0.14 -0.1
1,041,582 + 16146 mRNA_7778 0.20 -0.6

Or see this region's nucleotide sequence