Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7791

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16158 and 16159 are separated by 537 nucleotides16159 and 16160 are separated by 236 nucleotides mRNA_7790: 16158 - Hypothetical Protein, at 1,073,885 to 1,074,580 16158 mRNA_7791: 16159 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 1,075,118 to 1,077,656 16159 mRNA_7792: 16160 - Hypothetical Protein, at 1,077,893 to 1,078,494 16160

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,074,125 + 16158 mRNA_7790 0.34 +1.1
1,074,415 - 16158 mRNA_7790 0.76 +1.2
1,074,718 + +1.2
1,074,728 - +0.5
1,074,866 - +0.2
1,074,875 - +0.3
1,074,886 + +0.8
1,074,887 + +0.5
1,074,892 + +0.4
1,074,893 - +0.5
1,075,020 - +0.6
1,075,024 - -0.9
1,075,027 + +0.4
1,075,033 + -0.5
1,075,034 + -0.1
1,075,040 - -0.9
1,075,057 - -1.1
1,075,210 + +0.5
1,075,336 - -0.6
1,075,506 - 16159 mRNA_7791 0.15 +0.6
1,076,095 + 16159 mRNA_7791 0.38 +2.9
1,076,113 + 16159 mRNA_7791 0.39 -0.0
1,076,701 + 16159 mRNA_7791 0.62 -1.2
1,076,796 + 16159 mRNA_7791 0.66 +0.1
1,077,270 - 16159 mRNA_7791 0.85 -0.7
1,077,474 - +1.6
1,077,533 + +0.9
1,077,615 + -0.4
1,077,619 - +1.5
1,077,646 - +0.7
1,077,886 - +0.6
1,077,918 + -0.4
1,078,320 - 16160 mRNA_7792 0.71 +0.8
1,078,467 + +0.7

Or see this region's nucleotide sequence