Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7809

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16176 and 16177 are separated by 382 nucleotides16177 and 16178 are separated by 938 nucleotides mRNA_7808: 16176 - K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39, at 1,117,423 to 1,121,551 16176 mRNA_7809: 16177 - Hypothetical Protein, at 1,121,934 to 1,122,810 16177 mRNA_7810: 16178 - K02358 tuf, TUFM elongation factor Tu, at 1,123,749 to 1,125,478 16178

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,121,241 + +1.1
1,121,394 + +0.1
1,121,413 - +0.4
1,121,556 + -0.4
1,121,578 - +0.1
1,121,594 + -0.1
1,121,720 - +1.7
1,121,725 + -0.6
1,121,737 - -0.3
1,121,854 + +0.0
1,121,981 - +0.7
1,122,170 - 16177 mRNA_7809 0.27 +0.5
1,122,171 + 16177 mRNA_7809 0.27 -0.9
1,122,200 + 16177 mRNA_7809 0.30 +0.1
1,122,262 - 16177 mRNA_7809 0.37 +0.2
1,122,265 - 16177 mRNA_7809 0.38 -0.3
1,122,280 - 16177 mRNA_7809 0.39 -0.0
1,122,299 + 16177 mRNA_7809 0.42 +0.2
1,122,310 - 16177 mRNA_7809 0.43 -0.0
1,122,315 + 16177 mRNA_7809 0.43 +1.2
1,122,323 + 16177 mRNA_7809 0.44 +0.6
1,122,349 - 16177 mRNA_7809 0.47 +0.4
1,122,368 - 16177 mRNA_7809 0.49 +1.0
1,122,377 + 16177 mRNA_7809 0.51 -1.6
1,122,392 + 16177 mRNA_7809 0.52 +0.4
1,122,402 + 16177 mRNA_7809 0.53 +1.6
1,122,418 + 16177 mRNA_7809 0.55 +0.1
1,122,418 - 16177 mRNA_7809 0.55 +0.9
1,122,420 - 16177 mRNA_7809 0.55 +0.5
1,122,429 - 16177 mRNA_7809 0.56 +1.0
1,122,443 + 16177 mRNA_7809 0.58 +1.1
1,122,444 - 16177 mRNA_7809 0.58 -0.3
1,122,449 + 16177 mRNA_7809 0.59 +0.3
1,122,453 - 16177 mRNA_7809 0.59 +0.6
1,122,460 + 16177 mRNA_7809 0.60 +1.4
1,122,460 + 16177 mRNA_7809 0.60 +0.1
1,122,487 - 16177 mRNA_7809 0.63 +0.6
1,122,508 - 16177 mRNA_7809 0.65 +0.3
1,122,510 - 16177 mRNA_7809 0.66 -0.0
1,122,527 - 16177 mRNA_7809 0.68 +0.6
1,122,530 - 16177 mRNA_7809 0.68 -0.4
1,122,532 + 16177 mRNA_7809 0.68 +0.4
1,122,535 + 16177 mRNA_7809 0.69 +0.0
1,122,545 + 16177 mRNA_7809 0.70 +0.5
1,122,574 - 16177 mRNA_7809 0.73 -0.5
1,122,576 - 16177 mRNA_7809 0.73 +0.6
1,122,583 + 16177 mRNA_7809 0.74 +0.8
1,122,583 + 16177 mRNA_7809 0.74 +1.0
1,122,586 - 16177 mRNA_7809 0.74 -0.1
1,122,598 - 16177 mRNA_7809 0.76 +0.6
1,122,654 - 16177 mRNA_7809 0.82 +1.3
1,122,669 + 16177 mRNA_7809 0.84 +0.6
1,122,751 - -0.8
1,122,759 - -0.4
1,122,790 + -1.6
1,123,022 + +0.5
1,123,062 - +0.3
1,123,082 + +0.1
1,123,185 - +0.5
1,123,188 - +1.1
1,123,204 + -0.1
1,123,342 + -0.1
1,123,346 - +0.3
1,123,348 + +0.0
1,123,348 + -0.4
1,123,362 + -0.1
1,123,363 + -0.1
1,123,373 + -0.4
1,123,374 - +0.5
1,123,383 + +0.2

Or see this region's nucleotide sequence