Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7885

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16252 and 16253 are separated by 402 nucleotides16253 and 16254 are separated by 228 nucleotides mRNA_7884: 16252 - KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins, at 1,296,851 to 1,297,993 16252 mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,298,396 to 1,300,627 16253 mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1,300,856 to 1,302,140 16254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,297,572 + 16252 mRNA_7884 0.63 +1.1
1,297,589 + 16252 mRNA_7884 0.65 -1.4
1,297,866 - 16252 mRNA_7884 0.89 -1.5
1,297,875 + 16252 mRNA_7884 0.90 +1.3
1,298,024 - +1.2
1,298,045 - -0.5
1,298,045 - -0.2
1,298,060 + +0.1
1,298,067 + +0.2
1,298,176 + +0.7
1,298,190 + +2.6
1,298,211 + +0.8
1,298,214 - -0.5
1,298,270 - -0.1
1,298,299 - -0.6
1,298,306 + +0.6
1,298,309 + +0.1
1,298,317 - +1.2
1,298,317 - +0.7
1,298,318 - +1.6
1,298,319 - +0.5
1,298,321 - +0.3
1,298,325 + +0.7
1,298,430 - +0.3
1,298,626 - 16253 mRNA_7885 0.10 -0.1
1,298,634 + 16253 mRNA_7885 0.11 +0.2
1,298,634 + 16253 mRNA_7885 0.11 +0.3
1,298,676 + 16253 mRNA_7885 0.13 +0.2
1,298,934 + 16253 mRNA_7885 0.24 +2.4
1,299,228 + 16253 mRNA_7885 0.37 +0.1
1,299,464 - 16253 mRNA_7885 0.48 +0.8
1,299,495 - 16253 mRNA_7885 0.49 +0.6
1,299,610 + 16253 mRNA_7885 0.54 +0.5
1,299,666 + 16253 mRNA_7885 0.57 +0.7
1,299,673 - 16253 mRNA_7885 0.57 +0.1
1,299,689 - 16253 mRNA_7885 0.58 -0.1
1,299,771 - 16253 mRNA_7885 0.62 +0.4
1,299,778 + 16253 mRNA_7885 0.62 +1.2
1,299,804 + 16253 mRNA_7885 0.63 +0.3
1,300,073 - 16253 mRNA_7885 0.75 +0.9
1,300,074 - 16253 mRNA_7885 0.75 +0.6
1,300,118 - 16253 mRNA_7885 0.77 -0.1
1,300,123 + 16253 mRNA_7885 0.77 +0.8
1,300,145 - 16253 mRNA_7885 0.78 +0.1
1,300,244 - 16253 mRNA_7885 0.83 +1.0
1,300,256 - 16253 mRNA_7885 0.83 +0.7
1,300,268 + 16253 mRNA_7885 0.84 +0.0
1,300,275 + 16253 mRNA_7885 0.84 +0.4
1,300,282 - 16253 mRNA_7885 0.84 -1.1
1,300,298 + 16253 mRNA_7885 0.85 +0.1
1,300,301 - 16253 mRNA_7885 0.85 +0.2
1,300,310 - 16253 mRNA_7885 0.86 +0.3
1,300,381 - 16253 mRNA_7885 0.89 +0.4
1,300,384 + 16253 mRNA_7885 0.89 -0.8
1,300,405 - -0.5
1,300,432 + -0.1
1,300,443 - +0.4
1,300,463 - -0.2
1,300,494 + +0.4
1,300,592 + +0.5
1,300,736 + -0.4
1,300,850 + +0.7
1,301,253 - 16254 mRNA_7886 0.31 -0.4
1,301,409 + 16254 mRNA_7886 0.43 +0.7
1,301,422 + 16254 mRNA_7886 0.44 -0.0
1,301,435 + 16254 mRNA_7886 0.45 +1.1
1,301,575 - 16254 mRNA_7886 0.56 +0.3

Or see this region's nucleotide sequence