Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7903

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16270 and 16271 are separated by 211 nucleotides16271 and 16272 are separated by 511 nucleotides mRNA_7902: 16270 - K13348 MPV17 protein Mpv17, at 1,338,416 to 1,339,607 16270 mRNA_7903: 16271 - K14810 DDX56, DBP9 ATP-dependent RNA helicase DDX56/DBP9, at 1,339,819 to 1,342,318 16271 mRNA_7904: 16272 - Hypothetical Protein, at 1,342,830 to 1,343,789 16272

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,338,984 - 16270 mRNA_7902 0.48 +1.2
1,339,065 - 16270 mRNA_7902 0.54 -0.5
1,339,321 - 16270 mRNA_7902 0.76 +0.3
1,339,514 - +0.1
1,339,736 + +1.5
1,339,737 - +0.4
1,339,737 - +0.5
1,339,772 + +1.1
1,340,779 - 16271 mRNA_7903 0.38 -0.0
1,342,270 + -0.9
1,342,314 + +0.5
1,342,563 - +0.7
1,342,689 + +0.8
1,342,848 + +1.4
1,342,962 + 16272 mRNA_7904 0.14 +0.9
1,342,965 - 16272 mRNA_7904 0.14 -0.1
1,342,977 - 16272 mRNA_7904 0.15 -0.5
1,342,983 - 16272 mRNA_7904 0.16 +0.1
1,343,039 + 16272 mRNA_7904 0.22 +0.5
1,343,142 - 16272 mRNA_7904 0.33 +1.3
1,343,142 + 16272 mRNA_7904 0.33 +0.5
1,343,274 - 16272 mRNA_7904 0.46 +0.9

Or see this region's nucleotide sequence