Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7910

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16277 and 16278 are separated by 117 nucleotides mRNA_7909: 16277 - Hypothetical Protein, at 1,359,172 to 1,360,020 16277 mRNA_7910: 16278 - KOG3767 Sideroflexin, at 1,360,138 to 1,362,160 16278

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,359,181 + -0.3
1,359,329 + 16277 mRNA_7909 0.18 +0.3
1,359,439 - 16277 mRNA_7909 0.31 -0.5
1,359,474 - 16277 mRNA_7909 0.36 +0.1
1,359,488 - 16277 mRNA_7909 0.37 +0.2
1,359,599 - 16277 mRNA_7909 0.50 +1.3
1,359,664 - 16277 mRNA_7909 0.58 +1.7
1,359,733 - 16277 mRNA_7909 0.66 +0.6
1,359,838 - 16277 mRNA_7909 0.78 +0.5
1,359,845 - 16277 mRNA_7909 0.79 +0.2
1,359,846 - 16277 mRNA_7909 0.79 +1.7
1,359,879 - 16277 mRNA_7909 0.83 -0.4
1,359,879 - 16277 mRNA_7909 0.83 +1.5
1,359,913 - 16277 mRNA_7909 0.87 +0.2
1,360,033 + +0.7
1,360,040 - +0.4
1,360,042 - -0.5
1,360,047 - +0.3
1,360,065 + +0.8
1,360,092 + +0.2
1,360,144 + +0.4
1,360,147 - +0.2
1,360,148 + -0.8
1,360,148 + +1.0
1,360,231 - -0.1
1,360,339 - -0.0
1,360,347 + 16278 mRNA_7910 0.10 +0.0
1,360,375 - 16278 mRNA_7910 0.12 +0.6
1,360,538 + 16278 mRNA_7910 0.20 +0.2
1,360,659 - 16278 mRNA_7910 0.26 -0.0
1,360,705 - 16278 mRNA_7910 0.28 +0.7
1,360,774 - 16278 mRNA_7910 0.31 +0.4
1,360,798 + 16278 mRNA_7910 0.33 -0.6
1,360,888 - 16278 mRNA_7910 0.37 -0.1
1,360,977 - 16278 mRNA_7910 0.41 +0.5
1,361,054 - 16278 mRNA_7910 0.45 +0.2
1,361,054 - 16278 mRNA_7910 0.45 +0.6
1,361,086 + 16278 mRNA_7910 0.47 +0.1
1,361,183 - 16278 mRNA_7910 0.52 +1.6
1,361,240 - 16278 mRNA_7910 0.54 +0.5
1,361,503 - 16278 mRNA_7910 0.67 -0.1
1,361,523 - 16278 mRNA_7910 0.68 +0.4
1,361,628 + 16278 mRNA_7910 0.74 +0.3
1,361,670 + 16278 mRNA_7910 0.76 -0.0
1,361,795 - 16278 mRNA_7910 0.82 -0.2
1,361,811 - 16278 mRNA_7910 0.83 +0.2
1,361,819 - 16278 mRNA_7910 0.83 +0.3
1,361,940 - 16278 mRNA_7910 0.89 -0.4
1,361,948 - 16278 mRNA_7910 0.89 +0.9
1,361,966 - +0.6
1,361,973 + +0.4
1,362,020 - -0.1
1,362,119 - +0.3
1,362,124 + +0.5
1,362,132 + +0.1
1,362,141 + -0.1
1,362,144 - +0.2
1,362,169 - -1.3
1,362,169 - +0.1
1,362,205 + +0.6
1,362,209 - -0.2
1,362,216 - +0.8
1,362,235 + +0.2
1,362,242 - +0.2
1,362,242 - -0.5
1,362,243 + +1.0
1,362,280 + +0.4
1,362,283 - -0.5
1,362,285 - +0.3
1,362,313 - -0.5
1,362,323 + +0.2
1,362,359 - -0.0
1,362,360 + +1.6
1,362,363 - +0.9
1,362,364 - +0.2
1,362,367 - -0.6
1,362,380 - +0.3
1,362,394 - -0.6
1,362,397 + +0.5
1,362,398 - +0.6
1,362,400 - +0.1
1,362,400 - -0.2
1,362,404 - +0.0
1,362,405 - +0.5
1,362,407 + +0.2
1,362,409 - +1.0
1,362,410 + -0.1
1,362,417 + +0.1
1,362,418 - +0.4
1,362,420 - +0.9
1,362,437 - +1.6
1,362,437 - -0.6
1,362,438 - -0.5
1,362,438 - -1.5
1,362,438 - +3.0
1,362,442 - +0.1
1,362,447 - +0.8
1,362,475 - +0.1
1,362,475 - +0.9

Or see this region's nucleotide sequence