Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7920

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16287 and 16288 are separated by 610 nucleotides16288 and 16289 are separated by 221 nucleotides mRNA_7919: 16287 - K01489 cdd, CDA cytidine deaminase, at 22,432 to 23,509 16287 mRNA_7920: 16288 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 24,120 to 24,922 16288 mRNA_7921: 16289 - KOG3022 Predicted ATPase, nucleotide-binding, at 25,144 to 26,524 16289

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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23,214 + 16287 mRNA_7919 0.73 -0.1
23,443 + +0.7
23,865 + +0.2
23,900 + +0.3
23,902 - +1.3
23,950 + -0.6
24,079 + +0.4
24,136 + -0.2
24,299 - 16288 mRNA_7920 0.22 +1.0
24,319 + 16288 mRNA_7920 0.25 +0.1
24,323 - 16288 mRNA_7920 0.25 +0.2
24,434 + 16288 mRNA_7920 0.39 -0.5
24,640 + 16288 mRNA_7920 0.65 +0.8
24,923 + +0.6
24,998 - +0.1
25,057 + -1.1
25,077 + -1.1

Or see this region's nucleotide sequence