Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7954

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16321 and 16322 are separated by 544 nucleotides16322 and 16323 are separated by 434 nucleotides mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85,721 to 88,276 16321 mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88,821 to 92,965 16322 mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93,400 to 95,869 16323

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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87,867 - 16321 mRNA_7953 0.84 +1.0
87,958 - 16321 mRNA_7953 0.88 +0.3
88,107 + +0.2
88,246 - -0.6
88,266 - +0.5
88,389 + +0.9
88,443 - -0.3
88,450 + +0.1
88,471 - -0.1
88,501 + +1.3
88,568 - +0.1
88,591 + +1.1
88,592 + -0.0
88,593 - +1.3
88,593 - -0.3
88,605 + +0.8
88,625 + -0.5
88,639 + -1.2
88,705 - +0.2
88,712 + +0.2
88,781 + -0.1
88,873 + +1.7
88,878 + +0.8
88,880 - +0.3
88,896 + +1.2
88,929 + +0.6
88,930 + +0.4
89,003 + +0.6
89,013 + +0.9
89,040 + +0.0
89,180 - +2.3
89,197 - +0.5
89,558 + 16322 mRNA_7954 0.18 -0.3
89,664 + 16322 mRNA_7954 0.20 -1.3
89,790 + 16322 mRNA_7954 0.23 +0.3
89,921 + 16322 mRNA_7954 0.27 +0.0
90,027 - 16322 mRNA_7954 0.29 -0.1
90,250 - 16322 mRNA_7954 0.34 +1.2
90,617 + 16322 mRNA_7954 0.43 +1.6
90,784 + 16322 mRNA_7954 0.47 +0.3
90,960 - 16322 mRNA_7954 0.52 +0.5
90,964 + 16322 mRNA_7954 0.52 -0.5
91,083 + 16322 mRNA_7954 0.55 +0.1
91,210 - 16322 mRNA_7954 0.58 +0.9
91,228 + 16322 mRNA_7954 0.58 +0.2
91,317 - 16322 mRNA_7954 0.60 +0.3
91,651 + 16322 mRNA_7954 0.68 +0.3
91,672 + 16322 mRNA_7954 0.69 -0.4
91,988 + 16322 mRNA_7954 0.76 +0.5
92,096 - 16322 mRNA_7954 0.79 -0.4
92,142 - 16322 mRNA_7954 0.80 -0.0
92,215 - 16322 mRNA_7954 0.82 -0.2
92,246 + 16322 mRNA_7954 0.83 +0.3
92,797 + +1.6
92,979 - +0.4
93,326 + -0.2
93,335 - +0.5
93,338 + +0.0
93,342 - +0.4
93,347 + +0.1
93,348 - +0.3
93,349 + -0.6
93,349 + +0.0
93,524 - -0.2
93,893 - 16323 mRNA_7955 0.20 -0.1
93,956 - 16323 mRNA_7955 0.23 +0.0

Or see this region's nucleotide sequence