Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7966

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16333 and 16334 are separated by 440 nucleotides16334 and 16335 are separated by 799 nucleotides mRNA_7965: 16333 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 109,378 to 110,240 16333 mRNA_7966: 16334 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 110,681 to 111,565 16334 mRNA_7967: 16335 - Hypothetical Protein, at 112,365 to 112,943 16335

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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109,752 + 16333 mRNA_7965 0.43 +0.5
109,758 - 16333 mRNA_7965 0.44 +0.7
109,771 + 16333 mRNA_7965 0.46 +0.7
109,913 + 16333 mRNA_7965 0.62 -1.2
109,920 + 16333 mRNA_7965 0.63 +0.8
109,950 - 16333 mRNA_7965 0.66 +1.4
109,981 + 16333 mRNA_7965 0.70 -0.1
110,008 + 16333 mRNA_7965 0.73 +0.9
110,069 - 16333 mRNA_7965 0.80 -1.0
110,229 - -0.2
110,330 + +0.2
110,388 + +0.5
110,630 - +0.9
110,738 + +0.6
110,743 - +0.9
110,821 - 16334 mRNA_7966 0.16 +0.5
110,923 + 16334 mRNA_7966 0.27 -0.2
110,928 + 16334 mRNA_7966 0.28 -1.0
111,129 + 16334 mRNA_7966 0.51 +0.3
111,237 - 16334 mRNA_7966 0.63 +0.6
111,239 - 16334 mRNA_7966 0.63 +0.7
111,279 - 16334 mRNA_7966 0.68 -0.2
111,337 - 16334 mRNA_7966 0.74 -0.4
111,354 + 16334 mRNA_7966 0.76 -0.3
111,354 + 16334 mRNA_7966 0.76 +1.1
111,354 + 16334 mRNA_7966 0.76 -0.1
111,355 + 16334 mRNA_7966 0.76 +0.9
111,360 - 16334 mRNA_7966 0.77 +0.1
111,473 + 16334 mRNA_7966 0.89 +0.8
111,605 + -0.5
111,662 + +0.5
111,667 - +0.9
111,682 + -0.0
111,682 - +0.7
111,728 + +1.0
111,753 + +0.9
111,755 + +2.0
111,761 - +0.3
111,764 + +0.2
111,767 - -0.9
111,772 - +1.5
111,780 + -0.2
111,793 - +0.4
111,935 + -0.1
112,224 + +0.9
112,225 + -0.0
112,239 - +0.6
112,275 + -0.4
112,360 - -0.6
112,520 + 16335 mRNA_7967 0.27 +0.5
112,520 - 16335 mRNA_7967 0.27 +0.4
112,539 + 16335 mRNA_7967 0.30 -0.4
112,539 + 16335 mRNA_7967 0.30 +1.2

Or see this region's nucleotide sequence