Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7979

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16346 and 16347 are separated by 145 nucleotides16347 and 16348 are separated by 234 nucleotides mRNA_7978: 16346 - K13341 PEX7, PTS2R peroxin-7, at 136,245 to 137,738 16346 mRNA_7979: 16347 - KOG0504 FOG Ankyrin repeat, at 137,884 to 138,763 16347 mRNA_7980: 16348 - KOG0550 Molecular chaperone (DnaJ superfamily), at 138,998 to 141,142 16348

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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137,045 - 16346 mRNA_7978 0.54 +1.2
137,253 + 16346 mRNA_7978 0.67 -0.8
137,370 - 16346 mRNA_7978 0.75 +0.3
137,523 + 16346 mRNA_7978 0.86 -2.2
137,529 + 16346 mRNA_7978 0.86 +0.2
137,817 - +0.2
138,045 + 16347 mRNA_7979 0.18 +0.9
138,870 + +0.6
138,979 - +0.4
139,086 - +1.1
139,127 - +0.5
139,266 - 16348 mRNA_7980 0.12 +1.4

Or see this region's nucleotide sequence