Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8016

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16383 and 16384 are separated by 195 nucleotides16384 and 16385 are separated by 369 nucleotides mRNA_8015: 16383 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 215,153 to 216,105 16383 mRNA_8016: 16384 - K11968 ARIH1 ariadne-1, at 216,301 to 218,518 16384 mRNA_8017: 16385 - K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1, at 218,888 to 219,506 16385

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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215,308 - 16383 mRNA_8015 0.16 +0.3
215,312 - 16383 mRNA_8015 0.17 +0.3
215,491 + 16383 mRNA_8015 0.35 -0.3
215,519 - 16383 mRNA_8015 0.38 -1.1
215,539 + 16383 mRNA_8015 0.41 +0.7
215,540 - 16383 mRNA_8015 0.41 +0.5
215,548 - 16383 mRNA_8015 0.41 +0.1
215,548 + 16383 mRNA_8015 0.41 +0.1
215,558 + 16383 mRNA_8015 0.42 +1.2
215,582 + 16383 mRNA_8015 0.45 +0.5
215,598 - 16383 mRNA_8015 0.47 +1.9
215,620 - 16383 mRNA_8015 0.49 -1.0
215,661 + 16383 mRNA_8015 0.53 +0.3
215,667 - 16383 mRNA_8015 0.54 +0.5
215,671 - 16383 mRNA_8015 0.54 +0.5
215,686 + 16383 mRNA_8015 0.56 +1.3
215,692 + 16383 mRNA_8015 0.57 -0.5
215,834 - 16383 mRNA_8015 0.71 +0.2
215,948 + 16383 mRNA_8015 0.83 +0.2
215,972 - 16383 mRNA_8015 0.86 -0.3
215,976 + 16383 mRNA_8015 0.86 -1.2
216,105 + +1.2
216,228 + +0.9
216,265 - +0.8
216,282 - +0.0
216,292 + +1.9
217,993 - 16384 mRNA_8016 0.76 -0.1
218,697 - +0.3
218,723 - +0.7
218,875 - +0.5

Or see this region's nucleotide sequence