Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8035

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16402 and 16403 are separated by 259 nucleotides16403 and 16404 are separated by 550 nucleotides mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272,460 to 275,670 16402 mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275,930 to 278,853 16403 mRNA_8036: 16404 - K01942 HLCS biotin--protein ligase, at 279,404 to 281,646 16404

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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275,072 - 16402 mRNA_8034 0.81 +0.4
275,104 - 16402 mRNA_8034 0.82 -1.1
275,223 + 16402 mRNA_8034 0.86 -0.0
275,384 - +1.1
275,417 - +1.4
275,435 + +1.2
275,541 - -0.2
275,563 - +0.6
275,564 - +1.3
275,565 - +0.0
275,571 - +0.6
275,610 - +0.5
275,613 + -0.5
275,633 + +0.8
275,705 - +0.7
275,709 - -0.4
275,713 - +1.3
275,716 + +0.1
275,718 - +0.2
275,723 - +1.2
275,723 - +0.0
275,726 + +2.1
275,735 + +1.0
275,742 - -0.7
275,763 - +0.2
275,763 + +0.0
276,030 + +0.3
276,083 - -0.2
276,166 - -0.3
276,201 - -0.5
276,456 + 16403 mRNA_8035 0.18 +0.8
276,510 - 16403 mRNA_8035 0.20 +2.3
276,891 + 16403 mRNA_8035 0.33 +0.8
277,186 + 16403 mRNA_8035 0.43 +1.8
277,456 - 16403 mRNA_8035 0.52 -0.4
277,466 + 16403 mRNA_8035 0.53 +0.2
277,616 - 16403 mRNA_8035 0.58 -0.8
277,634 + 16403 mRNA_8035 0.58 +1.6
277,779 + 16403 mRNA_8035 0.63 +0.7
277,846 - 16403 mRNA_8035 0.66 +0.1
277,849 + 16403 mRNA_8035 0.66 +0.1
278,213 + 16403 mRNA_8035 0.78 +1.1
278,602 - +0.4
278,682 - +0.2
278,919 - +0.0
279,072 - +0.1
279,079 + +1.2
279,221 - +0.5
279,221 - -0.1
279,241 + +0.6
279,250 - +0.5
279,348 + +0.6
279,359 - +0.8
279,360 - +0.7
279,366 + +0.5
279,375 + +0.4
279,379 + +0.4

Or see this region's nucleotide sequence