Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8037

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16404 and 16405 are separated by 171 nucleotides16405 and 16406 are separated by 172 nucleotides mRNA_8036: 16404 - K01942 HLCS biotin--protein ligase, at 279,404 to 281,646 16404 mRNA_8037: 16405 - K14797 ENP1, BYSL essential nuclear protein 1, at 281,818 to 283,593 16405 mRNA_8038: 16406 - K05757 ARPC1A_B actin related protein 2/3 complex, subunit 1A/1B, at 283,766 to 285,253 16406

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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281,089 + 16404 mRNA_8036 0.75 +0.5
281,712 + +1.1
281,737 + -0.7
281,747 - +0.6
281,765 - +1.1
281,778 + +0.7
281,784 - +0.1
283,543 - +1.0
283,571 + -0.5
283,692 - +0.5
283,710 - -0.8
283,718 + +1.4
283,721 + +1.5

Or see this region's nucleotide sequence