Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8075

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16442 and 16443 are separated by 409 nucleotides mRNA_8074: 16442 - Hypothetical Protein, at 363,316 to 363,918 16442 mRNA_8075: 16443 - K13525 VCP, CDC48 transitional endoplasmic reticulum ATPase, at 364,328 to 367,178 16443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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363,551 - 16442 mRNA_8074 0.39 +0.5
363,565 - 16442 mRNA_8074 0.41 +1.1
363,569 + 16442 mRNA_8074 0.42 +1.2
363,691 - 16442 mRNA_8074 0.62 -1.1
363,843 + 16442 mRNA_8074 0.87 +0.5
363,961 + +0.6
363,980 - -0.5
363,987 + +1.1
364,120 - -0.0
364,140 - +0.9
364,165 + +0.1
364,281 - +0.9
364,298 - +0.6
367,454 - +0.1
367,462 + +0.6
367,464 - +0.3
367,476 + +0.6
367,489 + +0.5
367,494 - +1.1
367,593 + -0.3
367,599 + +0.4
367,604 - +0.6
367,614 - +0.9
367,621 + -0.5
367,635 + -0.1
367,766 + -0.9
367,768 - +0.1
367,769 + +0.1
367,796 + +0.6
367,810 + +0.6
367,816 + -0.2
367,892 + +0.1
367,893 + -0.7
367,896 - -0.2
367,901 + +0.6
367,920 - +1.1
367,920 + +0.6
367,920 - +0.1
367,923 + +0.3
367,933 - +1.0
367,941 - +0.5
367,953 + -0.5
367,956 + +0.4
367,958 - -0.4
367,972 + +0.5
367,975 - +0.9
367,985 + +1.8
367,989 + +0.4
368,011 + -0.7
368,013 + -0.2
368,014 - +0.3
368,017 - +0.2
368,018 - +0.3
368,021 - +1.1
368,026 - +0.5
368,032 + +0.5
368,040 - -0.3
368,046 + +1.8
368,056 - -0.5
368,057 - +0.8
368,060 + -0.5
368,061 - +0.2
368,064 - +0.4
368,067 - +0.8
368,097 - -0.0
368,111 + +0.2
368,111 + +0.8
368,133 - -0.7
368,135 - +0.0
368,152 - +0.6
368,155 - +0.3
368,156 + +0.2
368,162 - -0.9
368,177 - +1.3

Or see this region's nucleotide sequence