Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8094

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16461 and 16462 are separated by 190 nucleotides16462 and 16463 are separated by 507 nucleotides mRNA_8093: 16461 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 402,120 to 403,069 16461 mRNA_8094: 16462 - K10775 PAL phenylalanine ammonia-lyase, at 403,260 to 405,803 16462 mRNA_8095: 16463 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 406,311 to 408,343 16463

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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402,312 - 16461 mRNA_8093 0.20 +0.4
402,367 - 16461 mRNA_8093 0.26 +0.7
402,448 - 16461 mRNA_8093 0.35 -0.1
402,596 - 16461 mRNA_8093 0.50 +0.5
402,763 - 16461 mRNA_8093 0.68 +0.8
402,810 + 16461 mRNA_8093 0.73 +0.3
403,041 + -0.3
403,075 + +0.7
403,131 - -0.5
403,188 - -0.3
403,237 - -1.6
403,278 + -0.5
403,305 - -1.1
403,667 + 16462 mRNA_8094 0.16 +0.5
404,217 - 16462 mRNA_8094 0.38 +1.6
404,218 - 16462 mRNA_8094 0.38 +0.0
404,951 + 16462 mRNA_8094 0.66 +1.9
404,964 - 16462 mRNA_8094 0.67 +0.2
404,987 + 16462 mRNA_8094 0.68 +1.7
405,084 - 16462 mRNA_8094 0.72 -0.1
405,815 - +0.9
405,871 + -0.1
405,875 + -0.2
405,875 + +0.1
405,909 - +0.1
405,913 + +0.2
405,936 + -0.6
405,942 + +0.0
405,950 + +0.4
406,015 - -0.3
406,242 + +0.4
406,532 + 16463 mRNA_8095 0.11 +0.7

Or see this region's nucleotide sequence