Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8101

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16468 and 16469 are separated by 311 nucleotides16469 and 16470 are separated by 326 nucleotides mRNA_8100: 16468 - BLAST DigA protein [Rhizoctonia solani AG-3 Rhs1AP], at 418,661 to 419,532 16468 mRNA_8101: 16469 - Hypothetical Protein, at 419,844 to 420,309 16469 mRNA_8102: 16470 - Hypothetical Protein, at 420,636 to 421,256 16470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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419,350 - 16468 mRNA_8100 0.79 +0.6
419,350 - 16468 mRNA_8100 0.79 +0.2
420,105 - 16469 mRNA_8101 0.56 -0.0
420,108 - 16469 mRNA_8101 0.57 +0.6
420,126 - 16469 mRNA_8101 0.61 -0.0
420,274 - +0.5
420,390 - +0.5
420,393 + +0.7
420,404 - +2.1
420,432 + +0.7
420,437 - +0.2
420,708 - 16470 mRNA_8102 0.12 +0.8
420,866 - 16470 mRNA_8102 0.37 +0.0
421,191 + 16470 mRNA_8102 0.89 +0.4

Or see this region's nucleotide sequence