Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8122

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16489 and 16490 are separated by 32 nucleotides16490 and 16491 are separated by 194 nucleotides mRNA_8121: 16489 - Hypothetical Protein, at 470,033 to 470,823 16489 mRNA_8122: 16490 - K08010 NCF2, P67PHOX neutrophil cytosolic factor 2, at 470,856 to 473,193 16490 mRNA_8123: 16491 - Hypothetical Protein, at 473,388 to 473,878 16491

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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469,918 - +0.0
469,945 - +0.1
470,075 - -0.4
470,105 + +0.4
470,246 + 16489 mRNA_8121 0.27 +0.0
470,290 - 16489 mRNA_8121 0.32 +1.7
471,096 - 16490 mRNA_8122 0.10 +0.1
471,205 - 16490 mRNA_8122 0.15 +0.7
471,899 - 16490 mRNA_8122 0.45 +1.1
471,971 - 16490 mRNA_8122 0.48 +0.4
472,724 + 16490 mRNA_8122 0.80 +0.8
473,065 - +0.1
473,735 - 16491 mRNA_8123 0.71 +1.3
473,866 - +0.6
473,867 - +0.9
473,870 - +1.7
473,945 - +0.5
474,191 + +0.6
474,191 - +0.4

Or see this region's nucleotide sequence