Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8138

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16505 and 16506 are separated by 180 nucleotides mRNA_8137: 16505 - K00586 DPH5 diphthine methyl ester synthase, at 505,150 to 506,230 16505 mRNA_8138: 16506 - Hypothetical Protein, at 506,411 to 507,790 16506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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506,146 + +1.1
506,259 + -0.3
506,261 + +1.9
506,284 - +1.9
506,416 + +0.7
506,996 - 16506 mRNA_8138 0.42 +0.8
506,999 - 16506 mRNA_8138 0.43 -0.4
507,416 + 16506 mRNA_8138 0.73 +0.3
507,564 - 16506 mRNA_8138 0.84 +0.5
507,732 + -0.1
507,837 + +0.9
507,862 - -0.2
507,877 + -1.3
507,884 - +0.5
507,893 + +0.9
507,919 - +1.7
507,999 + +0.0
507,999 - -0.1
508,011 - +0.3
508,016 + -0.3
508,034 - +0.2
508,036 - +0.1
508,037 + -0.2
508,041 - +1.0
508,041 - +0.6
508,041 - +0.1
508,050 - -0.2
508,055 - -0.5
508,059 - +0.9
508,068 + -0.3
508,069 + -0.2
508,085 - +0.8
508,116 - -0.5
508,196 - +0.5
508,219 - -0.8
508,351 + +0.5
508,507 + +0.1
508,640 - +1.0
508,659 + +0.8
508,673 - +1.0
508,683 - +0.4
508,686 + +1.0

Or see this region's nucleotide sequence