Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8164

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16531 and 16532 are separated by 215 nucleotides mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563,626 to 564,400 16531 mRNA_8164: 16532 - Hypothetical Protein, at 564,616 to 567,626 16532

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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563,979 + 16531 mRNA_8163 0.46 +0.8
564,106 - 16531 mRNA_8163 0.62 +0.8
564,110 + 16531 mRNA_8163 0.62 +0.6
564,212 - 16531 mRNA_8163 0.76 +0.3
564,222 - 16531 mRNA_8163 0.77 -0.4
564,234 - 16531 mRNA_8163 0.78 +0.2
564,410 + +1.0
564,431 - +0.0
564,435 + +0.3
564,576 - +1.3
564,586 + +0.8
564,688 - +0.3
564,858 + +1.5
564,972 - 16532 mRNA_8164 0.12 +0.4
565,035 + 16532 mRNA_8164 0.14 -0.1
565,147 + 16532 mRNA_8164 0.18 +0.7
565,150 - 16532 mRNA_8164 0.18 +0.0
565,175 + 16532 mRNA_8164 0.19 -1.2
565,409 - 16532 mRNA_8164 0.26 -0.1
565,603 + 16532 mRNA_8164 0.33 +0.2
565,816 + 16532 mRNA_8164 0.40 +1.2
566,976 - 16532 mRNA_8164 0.78 +0.0
566,991 + 16532 mRNA_8164 0.79 +0.7
567,036 - 16532 mRNA_8164 0.80 +0.8
567,237 - 16532 mRNA_8164 0.87 +0.9
567,261 - 16532 mRNA_8164 0.88 +0.1
567,392 + +0.5
567,409 - +0.2
567,750 + -0.1
567,761 + +1.6
567,930 - +0.7
567,980 + +0.9
568,369 + +1.5
568,419 - -0.9
568,583 - +0.2

Or see this region's nucleotide sequence