Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8165

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16533 and 16534 are separated by 309 nucleotides mRNA_8165: 16533 - HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735, at 569,404 to 570,854 16533 mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571,164 to 574,503 16534

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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568,419 - -0.9
568,583 - +0.2
568,763 + -0.3
568,880 - +0.6
568,883 - -0.0
568,915 + -0.0
569,180 + -0.2
569,185 + -0.3
569,187 + +0.2
569,197 - -0.3
569,198 + +0.6
569,430 - +0.3
569,902 + 16533 mRNA_8165 0.34 -1.2
570,181 - 16533 mRNA_8165 0.54 +0.1
570,218 - 16533 mRNA_8165 0.56 +0.8
570,507 - 16533 mRNA_8165 0.76 -0.3
570,640 - 16533 mRNA_8165 0.85 +0.2
571,045 - +0.4
571,050 + +0.7
571,072 + +0.1
571,202 - +0.4
571,359 - -0.4
571,370 - +1.4
571,372 - +0.1
571,386 + +0.3
571,513 - 16534 mRNA_8166 0.10 +0.7
571,514 + 16534 mRNA_8166 0.10 +0.3
571,570 + 16534 mRNA_8166 0.12 -1.1

Or see this region's nucleotide sequence