Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8204

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16571 and 16572 are separated by 710 nucleotides16572 and 16573 are separated by 238 nucleotides mRNA_8203: 16571 - KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene, at 664,599 to 665,368 16571 mRNA_8204: 16572 - KOG3289 Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene, at 666,079 to 666,849 16572 mRNA_8205: 16573 - K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1, at 667,088 to 668,435 16573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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665,272 + 16571 mRNA_8203 0.87 +0.4
666,017 - -0.4
666,022 - -0.1
666,309 - 16572 mRNA_8204 0.30 +1.1
666,314 - 16572 mRNA_8204 0.30 -0.8
666,901 - +0.3
667,055 - +0.1

Or see this region's nucleotide sequence