Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8330

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16697 and 16698 are separated by 65 nucleotides mRNA_8329: 16697 - KOG0527 HMG-box transcription factor, at 950,835 to 951,817 16697 mRNA_8330: 16698 - BLAST clp1-like protein [Schizophyllum commune H4-8], at 951,883 to 952,795 16698

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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950,953 + 16697 mRNA_8329 0.12 +0.0
951,119 - 16697 mRNA_8329 0.29 -0.2
951,860 - -0.0
952,185 + 16698 mRNA_8330 0.33 +1.2
952,214 - 16698 mRNA_8330 0.36 +0.1
952,306 - 16698 mRNA_8330 0.46 -0.1
952,326 - 16698 mRNA_8330 0.49 +0.3
952,471 - 16698 mRNA_8330 0.64 +0.0
952,479 + 16698 mRNA_8330 0.65 +0.3
952,479 - 16698 mRNA_8330 0.65 +0.7
952,565 + 16698 mRNA_8330 0.75 +1.7
952,600 + 16698 mRNA_8330 0.79 -0.5
952,627 - 16698 mRNA_8330 0.81 +0.0
952,736 - +0.5
952,741 + +0.9
952,759 + +0.3
952,768 + +1.4
952,889 - +1.0
952,892 - +0.6
952,892 - +0.1
952,909 + -1.3
952,915 + -0.2
952,919 + -0.7
952,941 + +0.5
952,953 - -0.3
952,963 + -0.3
953,046 - +0.8
953,227 - +0.4
953,234 + +0.2
953,257 + -0.4
953,274 + -0.4
953,362 - -1.3
953,382 - -0.1
953,408 - -1.4
953,697 + +0.5

Or see this region's nucleotide sequence