Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8335

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16702 and 16703 are separated by 693 nucleotides16703 and 16704 are separated by 346 nucleotides mRNA_8334: 16702 - BLAST mtf1_muccl ame full transcription factor mtf1 [Licht..., at 961,362 to 964,238 16702 mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964,932 to 965,872 16703 mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966,219 to 967,737 16704

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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963,982 + +0.0
964,148 - +0.5
964,156 - +0.8
964,248 + +0.3
964,264 + +0.1
964,279 - +0.7
964,316 - +1.0
964,425 - +0.8
964,430 - -1.1
964,447 - +0.5
964,449 - -0.4
964,455 - -0.9
964,458 - +0.7
964,598 - +1.3
964,599 - +0.5
964,600 - -1.1
964,601 - -0.6
964,606 - +0.2
964,606 - +0.2
964,608 - -0.7
964,612 - -0.3
964,616 + -0.3
964,617 + +0.5
964,618 + -0.4
964,634 + +0.4
964,786 - +1.9
964,796 + +0.5
964,798 + +2.8
964,840 - +0.1
964,840 - +0.8
964,846 + +2.0
964,850 + -0.3
964,855 + +0.1
964,856 + +0.5
964,865 - +0.9
964,866 + +1.0
964,866 + +1.5
964,870 + +0.1
964,875 - +0.8
964,877 - +0.6
964,887 + +1.1
965,048 - 16703 mRNA_8335 0.12 -0.2
965,135 - 16703 mRNA_8335 0.22 -0.3
965,147 - 16703 mRNA_8335 0.23 -0.8
965,151 - 16703 mRNA_8335 0.23 +0.2
965,156 + 16703 mRNA_8335 0.24 +0.2
965,178 - 16703 mRNA_8335 0.26 +0.0
965,315 + 16703 mRNA_8335 0.41 +1.4
965,322 + 16703 mRNA_8335 0.41 -0.8
965,333 + 16703 mRNA_8335 0.43 +0.0
965,338 + 16703 mRNA_8335 0.43 -0.3
965,345 + 16703 mRNA_8335 0.44 +0.2
965,356 + 16703 mRNA_8335 0.45 +0.1
965,470 - 16703 mRNA_8335 0.57 +0.4
965,488 - 16703 mRNA_8335 0.59 -0.1
965,499 + 16703 mRNA_8335 0.60 -0.2
965,510 + 16703 mRNA_8335 0.61 -0.5
965,627 + 16703 mRNA_8335 0.74 +1.4
965,816 - +0.5
965,897 + +0.9
965,907 + +0.3
966,078 + +1.4
966,352 - +1.3
966,357 + -0.4
966,378 + 16704 mRNA_8336 0.10 +0.1
966,485 - 16704 mRNA_8336 0.18 -0.6
966,512 + 16704 mRNA_8336 0.19 +0.3

Or see this region's nucleotide sequence