Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8341

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16708 and 16709 are separated by 200 nucleotides16709 and 16710 are separated by 275 nucleotides mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357 16708 mRNA_8341: 16709 - K14569 BMS1 ribosome biogenesis protein BMS1, at 977,558 to 981,587 16709 mRNA_8342: 16710 - Hypothetical Protein, at 981,863 to 982,243 16710

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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977,479 - -0.2
977,494 + +1.3
977,496 - -0.4
977,501 - +0.4
977,536 - -0.7
981,785 - -0.2
982,260 - +0.5
982,390 - -0.3

Or see this region's nucleotide sequence