Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8362

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16729 and 16730 are separated by 558 nucleotides16730 and 16731 are separated by 553 nucleotides mRNA_8361: 16729 - K06640 ATR serine/threonine-protein kinase ATR, at 1,032,908 to 1,038,730 16729 mRNA_8362: 16730 - Hypothetical Protein, at 1,039,289 to 1,041,924 16730 mRNA_8363: 16731 - KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins, at 1,042,478 to 1,043,371 16731

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,039,948 + 16730 mRNA_8362 0.25 +1.5
1,041,951 + -0.1
1,041,954 - -0.0
1,041,977 + +1.8
1,041,987 - +0.2
1,041,993 + +0.6
1,042,007 - +0.7
1,042,102 - +0.3
1,042,152 + +0.5
1,042,153 + +0.1
1,042,261 - +0.1
1,042,287 + +1.4
1,042,433 - +0.2
1,042,563 - -1.2
1,042,579 + 16731 mRNA_8363 0.11 +0.6
1,042,583 - 16731 mRNA_8363 0.12 +0.5
1,042,708 - 16731 mRNA_8363 0.26 +0.0
1,042,733 + 16731 mRNA_8363 0.29 -0.3
1,042,882 + 16731 mRNA_8363 0.45 -0.5

Or see this region's nucleotide sequence