Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8373

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16740 and 16741 are separated by 183 nucleotides16741 and 16742 are separated by 279 nucleotides mRNA_8372: 16740 - KOG1729 FYVE finger containing protein, at 1,057,653 to 1,060,208 16740 mRNA_8373: 16741 - KOG0504 FOG Ankyrin repeat, at 1,060,392 to 1,061,446 16741 mRNA_8374: 16742 - KOG0053 Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,061,726 to 1,063,499 16742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,059,533 + 16740 mRNA_8372 0.74 +0.2
1,059,605 + 16740 mRNA_8372 0.76 +0.5
1,059,698 + 16740 mRNA_8372 0.80 -0.5
1,059,763 + 16740 mRNA_8372 0.83 +1.3
1,059,917 + 16740 mRNA_8372 0.89 +1.5
1,060,044 - -0.6
1,060,257 - +0.9
1,060,371 + -1.7
1,060,631 - 16741 mRNA_8373 0.23 +0.3
1,060,667 + 16741 mRNA_8373 0.26 +1.4
1,060,693 + 16741 mRNA_8373 0.29 +0.4
1,061,134 - 16741 mRNA_8373 0.70 +0.7
1,061,229 - 16741 mRNA_8373 0.79 -0.5
1,061,230 + 16741 mRNA_8373 0.79 +1.9
1,061,233 - 16741 mRNA_8373 0.80 +0.6
1,061,233 - 16741 mRNA_8373 0.80 +1.7
1,061,376 + +0.0
1,061,397 + +0.6
1,061,688 - +0.1
1,061,706 - -0.4
1,062,286 - 16742 mRNA_8374 0.32 -0.1
1,062,297 + 16742 mRNA_8374 0.32 +0.2

Or see this region's nucleotide sequence