Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8376

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16743 and 16744 are separated by 218 nucleotides16744 and 16745 are separated by 147 nucleotides mRNA_8375: 16743 - HMMPfam-Velvet factor-PF11754, at 1,064,293 to 1,065,552 16743 mRNA_8376: 16744 - Hypothetical Protein, at 1,065,771 to 1,066,578 16744 mRNA_8377: 16745 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 1,066,726 to 1,069,498 16745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,064,888 - 16743 mRNA_8375 0.47 -1.0
1,065,071 - 16743 mRNA_8375 0.62 +0.2
1,065,106 - 16743 mRNA_8375 0.65 +0.3
1,065,381 - 16743 mRNA_8375 0.86 +0.4
1,065,636 - +0.8
1,065,669 + +0.4
1,065,670 - -0.3
1,065,742 + +0.0
1,065,784 - +1.1
1,065,795 - +0.1
1,066,372 + 16744 mRNA_8376 0.74 +0.1
1,066,661 + +0.2
1,066,676 - -0.5
1,066,792 + +0.8
1,066,953 - +0.9
1,067,225 + 16745 mRNA_8377 0.18 -0.6
1,067,355 - 16745 mRNA_8377 0.23 +0.9

Or see this region's nucleotide sequence