Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8396

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16763 and 16764 are separated by 729 nucleotides16764 and 16765 are separated by 350 nucleotides mRNA_8395: 16763 - SUPERFAMILY--SSF52047, at 1,119,619 to 1,120,614 16763 mRNA_8396: 16764 - HMMPfam-Ribosomal protein S8-PF00410,SUPERFAMILY--SSF56047, at 1,121,344 to 1,121,811 16764 mRNA_8397: 16765 - K02946 RP-S10, MRPS10, rpsJ small subunit ribosomal protein S10, at 1,122,162 to 1,123,126 16765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,120,351 + 16763 mRNA_8395 0.73 +0.0
1,120,453 - 16763 mRNA_8395 0.84 +1.0
1,120,748 - +1.4
1,120,776 - +0.1
1,120,787 + +0.8
1,120,789 + -0.6
1,120,944 + -0.6
1,121,062 - +0.0
1,121,219 - +1.0
1,121,227 + +0.1
1,121,228 + +0.2
1,121,964 - +0.1
1,121,969 - +0.8
1,121,974 + +0.5
1,121,975 + +0.7
1,121,978 + +0.9
1,122,095 - -0.4
1,122,103 - +0.4
1,122,105 + +0.4
1,122,105 - -1.6
1,122,106 - +0.3
1,122,115 + +0.1
1,122,157 - +0.9

Or see this region's nucleotide sequence