Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8400

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16767 and 16768 are separated by 304 nucleotides16768 and 16769 are separated by 233 nucleotides mRNA_8399: 16767 - KOG1721 FOG Zn-finger, at 1,128,707 to 1,128,957 16767 mRNA_8400: 16768 - K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25, at 1,129,262 to 1,130,136 16768 mRNA_8401: 16769 - K16315 GSG2 serine/threonine-protein kinase haspin, at 1,130,370 to 1,132,967 16769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,128,437 - +0.3
1,128,555 + +0.4
1,128,571 + +0.9
1,128,610 - +0.4
1,128,753 + 16767 mRNA_8399 0.18 +0.3
1,129,069 + -0.5
1,129,467 + 16768 mRNA_8400 0.23 -1.2
1,129,476 + 16768 mRNA_8400 0.24 -0.3
1,129,640 - 16768 mRNA_8400 0.43 +2.1
1,130,171 - +0.1
1,130,227 - -0.7
1,130,230 + +0.9
1,130,322 - -0.2
1,130,322 - +0.2
1,130,393 + +0.7
1,130,497 - -0.1
1,130,617 + +0.6
1,130,958 + 16769 mRNA_8401 0.23 -1.1
1,131,046 + 16769 mRNA_8401 0.26 -0.4
1,131,111 + 16769 mRNA_8401 0.29 -0.1
1,131,133 - 16769 mRNA_8401 0.29 +0.1

Or see this region's nucleotide sequence