Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8456

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16823 and 16824 are separated by 123 nucleotides mRNA_8455: 16823 - K06013 STE24 STE24 endopeptidase, at 1,274,960 to 1,276,666 16823 mRNA_8456: 16824 - Hypothetical Protein, at 1,276,790 to 1,279,771 16824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,275,929 - 16823 mRNA_8455 0.57 -1.0
1,275,934 - 16823 mRNA_8455 0.57 +0.2
1,276,043 + 16823 mRNA_8455 0.63 -0.4
1,276,067 - 16823 mRNA_8455 0.65 -0.2
1,276,080 + 16823 mRNA_8455 0.66 -0.5
1,276,363 + 16823 mRNA_8455 0.82 +0.7
1,276,504 - -0.8
1,276,537 + -0.4
1,276,557 + +0.0
1,276,634 - -0.7
1,276,734 + -0.7
1,276,754 - +0.0
1,276,819 - +0.6
1,276,884 + +0.5
1,277,057 + +0.0
1,277,556 - 16824 mRNA_8456 0.26 -0.3
1,277,829 + 16824 mRNA_8456 0.35 +0.3
1,277,995 + 16824 mRNA_8456 0.40 +0.6
1,278,193 + 16824 mRNA_8456 0.47 -0.2
1,278,219 + 16824 mRNA_8456 0.48 +0.5
1,278,268 + 16824 mRNA_8456 0.50 +0.5
1,278,299 + 16824 mRNA_8456 0.51 +2.2
1,278,405 - 16824 mRNA_8456 0.54 +1.0
1,278,411 + 16824 mRNA_8456 0.54 +1.3
1,278,465 + 16824 mRNA_8456 0.56 +0.6
1,278,623 - 16824 mRNA_8456 0.61 +0.5
1,278,627 - 16824 mRNA_8456 0.62 -0.5
1,278,712 - 16824 mRNA_8456 0.64 -0.3
1,278,751 - 16824 mRNA_8456 0.66 +2.4
1,278,806 + 16824 mRNA_8456 0.68 +2.0
1,279,075 + 16824 mRNA_8456 0.77 +0.0
1,279,236 + 16824 mRNA_8456 0.82 +0.1
1,279,246 + 16824 mRNA_8456 0.82 +0.2
1,279,248 - 16824 mRNA_8456 0.82 -0.2
1,279,249 + 16824 mRNA_8456 0.82 +0.0
1,279,423 + 16824 mRNA_8456 0.88 -0.0
1,279,456 - 16824 mRNA_8456 0.89 +0.8
1,279,489 - -0.1
1,279,495 + +0.3
1,279,584 - +0.3
1,279,826 - -0.7
1,279,854 + +2.4
1,279,872 - +0.4
1,279,946 + +0.6
1,279,989 - +0.3
1,279,998 - +1.1
1,280,005 + +0.6
1,280,007 + +0.0
1,280,018 + +0.6
1,280,019 + +0.2
1,280,029 - +0.4
1,280,042 + +0.3
1,280,045 - -0.4
1,280,254 - -0.2
1,280,346 + +0.3
1,280,414 - +0.9
1,280,443 - -0.0
1,280,494 + +0.1
1,280,501 + +0.2
1,280,562 + +2.0
1,280,563 - -1.1
1,280,759 - +0.2
1,280,760 + -0.1

Or see this region's nucleotide sequence